fungarium
Preface
1
Introduction
1.1
Motivation
1.2
Getting started
1.2.1
Installing fungarium
1.2.2
Retrieving MyCoPortal data
1.2.3
Retrieving GBIF data
2
Taxonomic analysis
2.1
Update taxon names and clean up
2.2
Calculating trait enrichment factors
2.3
Visualize trait enrichment factors
3
Geographic analysis
3.1
Clean coordinates
3.2
Assigning records to geographic grid cells
3.3
Calculate trait enrichment per grid cell
3.4
Visualize trait enrichment
4
Temporal analysis
5
Final Words
References
Published with bookdown
fungarium: Enabling the use of fungaria collections data for comprehensive trait analyses in R
References
Simpson, H. J., and J. S. Schilling. 2021.
“Using Aggregated Field Collection Data and the Novel r Package FUNGARIUM to Investigate Fungal Fire Association.”
Mycologia
.